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O14744 | ANM5_HUMAN | Protein arginine N-methyltransferase 5 (PRMT5)

3D structures mapped by conservation among orthologs

[ Domain: "TIM barrels" // PRMT5_TIM ]

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[ Domain: "S-adenosyl-L-methionine-dependent methyltransferases" // PRMT5 ]

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[ Domain: "Arginine methyltransferase oligomerization subdomain" // PRMT5_C ]

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[ Domain: pdbs with more than 2 multi-domains ]

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[ Alpha Fold Model ] (go)


Known binders annotated in ChEMBL

IC50 table Ki table

molecule_chembl_id structure assay_type relation values units mol_wt smiles organism assay_chembl_id bao_label
CHEMBL4785053 OBDepict NH 2 H N H O H HO H N H HO N N N NH 2 IC50 = -7000.0 nM 363.42 NCC[C@H]1CCCN1C[C@H]1O[C@@H](n2cnc3c(N)ncnc32)[C@H](O)[C@@H]1O Homo sapiens CHEMBL4731562 cell-based format
CHEMBL4441584 OBDepict F Cl OH H H O H HO H N H HO N N NH 2 Ki = 0.02 nM 394.79 Nc1ncnc2c1ccn2[C@@H]1O[C@H]([C@H](O)c2ccc(Cl)c(F)c2)[C@@H](O)[C@H]1O Homo sapiens CHEMBL4392554 single protein format
CHEMBL4541714 OBDepict H 2 N N H H OH H N H OH N N NH 2 IC50 = 0.16 nM 404.47 Nc1ccc2ccc(CC[C@H]3C[C@@H](n4ccc5c(N)ncnc54)[C@H](O)[C@@H]3O)cc2n1 Homo sapiens CHEMBL4392562 cell-based format
CHEMBL4543007 OBDepict H 2 N N N N H H OH H H OH N N H IC50 = 0.4 nM 458.57 Nc1ncnc2c1ccn2[C@@H]1C[C@H](CCc2ccc3ccc(NCC4CC4)nc3c2)[C@@H](O)[C@H]1O Homo sapiens CHEMBL4392562 cell-based format
CHEMBL4455651 OBDepict F F F O H 3 C H N H H HO H N H OH N N CH 3 IC50 = 1.0 nM 462.47 Cc1ncnc2c1ccn2[C@@H]1C[C@H](Oc2cc(C(F)F)c(F)c3c2CNCC3C)[C@@H](O)[C@H]1O Homo sapiens CHEMBL4392554 single protein format
CHEMBL4441584 OBDepict F Cl OH H H O H HO H N H HO N N NH 2 IC50 = 1.0 nM 394.79 Nc1ncnc2c1ccn2[C@@H]1O[C@H]([C@H](O)c2ccc(Cl)c(F)c2)[C@@H](O)[C@H]1O Homo sapiens CHEMBL4327367 single protein format
CHEMBL4517481 OBDepict CH 3 N N N H O H OH H H HO OH H NH IC50 = 1.0 nM 396.45 Cc1ncnc2c1ccn2[C@@H]1O[C@H]([C@H](O)c2cccc3c2CNCC3)[C@@H](O)[C@H]1O Homo sapiens CHEMBL4392554 single protein format
CHEMBL4585734 OBDepict CH 3 N N N H H OH H O H HO HN IC50 = 1.0 nM 380.45 Cc1ncnc2c1ccn2[C@@H]1C[C@H](Oc2cccc3c2CNCC3)[C@@H](O)[C@H]1O Homo sapiens CHEMBL4392554 single protein format
CHEMBL4445368 OBDepict Br O H N H H HO H N H OH N N CH 3 IC50 = 1.0 nM 459.34 Cc1ncnc2c1ccn2[C@@H]1C[C@H](Oc2cc(Br)cc3c2CNCC3)[C@@H](O)[C@H]1O Homo sapiens CHEMBL4392554 single protein format
CHEMBL4541232 OBDepict N O H N H H OH H N H HO N N H 3 C IC50 = 1.0 nM 405.46 Cc1ncnc2c1ccn2[C@@H]1C[C@H](Oc2cc(C#N)cc3c2CNCC3)[C@@H](O)[C@H]1O Homo sapiens CHEMBL4392554 single protein format
CHEMBL4547524 OBDepict F F O H N H H OH H N H HO N N H 3 C IC50 = 1.0 nM 430.46 Cc1ncnc2c1ccn2[C@@H]1C[C@H](Oc2cc(C(F)F)cc3c2CNCC3)[C@@H](O)[C@H]1O Homo sapiens CHEMBL4392554 single protein format
CHEMBL4563402 OBDepict F F F O H N H H HO H N H OH N N CH 3 IC50 = 1.0 nM 448.45 Cc1ncnc2c1ccn2[C@@H]1C[C@H](Oc2cc(C(F)F)c(F)c3c2CNCC3)[C@@H](O)[C@H]1O Homo sapiens CHEMBL4392554 single protein format
CHEMBL4448266 OBDepict CH 3 O F O H HN H HO H N H HO N N H 3 C IC50 = 1.0 nM 428.46 COc1cc(O[C@H]2C[C@@H](n3ccc4c(C)ncnc43)[C@H](O)[C@@H]2O)c2c(c1F)CCNC2 Homo sapiens CHEMBL4392554 single protein format
CHEMBL4470815 OBDepict F O F F O H N H H HO H N H OH N N CH 3 IC50 = 1.0 nM 464.44 Cc1ncnc2c1ccn2[C@@H]1C[C@H](Oc2cc(OC(F)F)c(F)c3c2CNCC3)[C@@H](O)[C@H]1O Homo sapiens CHEMBL4392554 single protein format
CHEMBL4579773 OBDepict H 3 C N N H H HO H N H OH N N NH 2 IC50 = 1.26 nM 392.46 Cc1cnc2cc(CC[C@H]3C[C@@H](n4ccc5c(N)ncnc54)[C@H](O)[C@@H]3O)ccn12 Homo sapiens CHEMBL4392562 cell-based format
CHEMBL4579108 OBDepict H 3 C N N N H H HO H O H OH NH F F F IC50 = 2.0 nM 448.45 Cc1ncnc2c1ccn2[C@@H]1C[C@H](Oc2cc(C(F)(F)F)cc3c2CNCC3)[C@@H](O)[C@H]1O Homo sapiens CHEMBL4392554 single protein format
CHEMBL4460647 OBDepict CH 3 N N N H H OH H H HO OH H NH IC50 = 2.0 nM 394.48 Cc1ncnc2c1ccn2[C@@H]1C[C@H]([C@H](O)c2cccc3c2CNCC3)[C@@H](O)[C@H]1O Homo sapiens CHEMBL4392554 single protein format
CHEMBL4577464 OBDepict F N H 3 C N H H HO H N H OH N N NH 2 IC50 = 2.0 nM 410.45 Cc1cnc2cc(CC[C@H]3C[C@@H](n4ccc5c(N)ncnc54)[C@H](O)[C@@H]3O)c(F)cn12 Homo sapiens CHEMBL4392562 cell-based format
CHEMBL4542380 OBDepict O HN N N H OH H N IC50 = 3.0 nM 380.49 O=C(NC[C@H](O)CN1CCc2ccccc2C1)c1ccnc(NC2CCC2)c1 Homo sapiens CHEMBL4680701 cell-based format
CHEMBL4539612 OBDepict H 3 C N CH 3 N H H HO H N H OH N N NH 2 IC50 = 3.98 nM 406.49 Cc1nc2cc(CC[C@H]3C[C@@H](n4ccc5c(N)ncnc54)[C@H](O)[C@@H]3O)ccn2c1C Homo sapiens CHEMBL4392562 cell-based format
CHEMBL4466233 OBDepict CH 3 N O HN N N NH O HO H N IC50 = 6.2 nM 452.56 CC(=O)N1CCC(Nc2cc(C(=O)NC[C@H](O)CN3CCc4ccccc4C3)ncn2)CC1 Homo sapiens CHEMBL4327367 single protein format
CHEMBL4249337 OBDepict NH 2 N Br H H OH H N H OH N N NH 2 IC50 = 6.3 nM 483.37 Nc1nc2cc(CC[C@H]3C[C@@H](n4ccc5c(N)ncnc54)[C@H](O)[C@@H]3O)ccc2cc1Br Homo sapiens CHEMBL4232670 cell-based format
CHEMBL4541070 OBDepict NH 2 N H H HO H N H HO N N H 2 N IC50 = 6.31 nM 354.41 Nc1ccc(CC[C@H]2C[C@@H](n3ccc4c(N)ncnc43)[C@H](O)[C@@H]2O)cn1 Homo sapiens CHEMBL4392562 cell-based format
CHEMBL4564327 OBDepict Cl N H 3 C N H H HO H N H OH N N NH 2 IC50 = 6.31 nM 426.91 Cc1cnc2cc(CC[C@H]3C[C@@H](n4ccc5c(N)ncnc54)[C@H](O)[C@@H]3O)c(Cl)cn12 Homo sapiens CHEMBL4392562 cell-based format
CHEMBL4439077 OBDepict NH 2 N N N H H OH H H HO N IC50 = 7.9 nM 389.46 Nc1ncnc2c1ccn2[C@@H]1C[C@H](CCc2ccc3cccnc3c2)[C@@H](O)[C@H]1O Homo sapiens CHEMBL4392562 cell-based format
CHEMBL4454122 OBDepict NH 2 N N N H O H OH H H HO N F F HN ClH IC50 = 8.7 nM 460.91 Cl.Nc1ncnc2c1ccn2[C@@H]1O[C@H](CN2CC(F)(F)CC23CCNCC3)[C@@H](O)[C@H]1O Homo sapiens CHEMBL4392564 single protein format
CHEMBL4518534 OBDepict Cl HO H H O H HO H N H OH N N N OH IC50 = 12.0 nM 418.84 OC1CN=C2c3ccn([C@@H]4O[C@H]([C@H](O)c5ccc(Cl)cc5)[C@@H](O)[C@H]4O)c3N=CN21 Homo sapiens CHEMBL4307074 cell-based format
CHEMBL3938760 OBDepict O HN N H OH H N O IC50 = 13.0 nM 409.53 O=C(NC[C@H](O)CN1CCc2ccccc2C1)c1cccc(NC2CCOCC2)c1 Homo sapiens CHEMBL4680701 cell-based format
CHEMBL3958947 OBDepict O N H O HO H N N IC50 = 16.0 nM 391.47 O=C(COc1cccc2cccnc12)NC[C@@H](O)CN1CCc2ccccc2C1 Homo sapiens CHEMBL4680701 cell-based format
CHEMBL4524391 OBDepict NH 2 N N N H O H OH H H HO N HN ClH IC50 = 22.0 nM 424.93 Cl.Nc1ncnc2c1ccn2[C@@H]1O[C@H](CN2CCCC23CCNCC3)[C@@H](O)[C@H]1O Homo sapiens CHEMBL4392564 single protein format
CHEMBL4060831 OBDepict O NH N N N H HO H N O IC50 = 22.0 nM 383.45 O=C(NC[C@H](O)CN1CCc2ccccc2C1)c1cc(NC2COC2)ncn1 Homo sapiens CHEMBL4232661 single protein format
CHEMBL4539373 OBDepict O N H N N N H O H HO H H OH HO H Cl IC50 = 22.0 nM 418.84 O=CCNc1ncnc2c1ccn2[C@@H]1O[C@H]([C@H](O)c2ccc(Cl)cc2)[C@@H](O)[C@H]1O Homo sapiens CHEMBL4307074 cell-based format
CHEMBL4168754 OBDepict NH 2 N N N H O H OH H H HO OH H IC50 = 25.0 nM 342.36 Nc1ncnc2c1ccn2[C@@H]1O[C@H]([C@H](O)c2ccccc2)[C@@H](O)[C@H]1O Homo sapiens CHEMBL4151141 cell-based format
CHEMBL4248047 OBDepict CH 3 N O O N Cl HN O HO H H HN IC50 = 26.0 nM 472.97 CC(=O)N1CCC(Oc2nccc(C(=O)NC[C@@H](O)[C@@H]3Cc4ccccc4CN3)c2Cl)CC1 Homo sapiens CHEMBL4232664 cell-based format
CHEMBL3963350 OBDepict O N H HO H N N IC50 = 32.0 nM 387.48 O=C(NC[C@H](O)CN1CCc2ccccc2C1)c1cccc(-c2ccccn2)c1 Homo sapiens CHEMBL4680701 cell-based format
CHEMBL4550297 OBDepict NH 2 N N N N H O H OH H HO NH 2 H NH 2 H O HO IC50 = 35.0 nM 379.38 Nc1ncnc2c1ncn2[C@@H]1O/C(=C[C@@H](N)CC[C@H](N)C(=O)O)[C@@H](O)[C@H]1O Homo sapiens CHEMBL4327366 cell-based format
CHEMBL3919677 OBDepict OH N N H O O N IC50 = 36.0 nM 391.47 O=C(COc1cccc2cccnc12)NCC(O)CN1CCc2ccccc2C1 Homo sapiens CHEMBL4680701 cell-based format
CHEMBL3927051 OBDepict OH N NH O N IC50 = 37.0 nM 387.48 O=C(NCC(O)CN1CCc2ccccc2C1)c1cccc(-c2ccccn2)c1 Homo sapiens CHEMBL4680701 cell-based format
CHEMBL4548376 OBDepict H 3 C O N H N N N H O H OH H H HO OH H F F IC50 = 43.0 nM 434.4 CC(=O)CNc1ncnc2c1ccn2[C@@H]1O[C@H]([C@H](O)c2ccc(F)c(F)c2)[C@@H](O)[C@H]1O Homo sapiens CHEMBL4307074 cell-based format
CHEMBL4540972 OBDepict NH 2 N N N H H OH H H HO N IC50 = 51.3 nM 387.44 Nc1ncnc2c1ccn2[C@@H]1C[C@H](/C=C/c2ccc3cccnc3c2)[C@@H](O)[C@H]1O Homo sapiens CHEMBL4392562 cell-based format
CHEMBL4595238 OBDepict NH 2 N N N H O H OH H H HO N HN IC50 = 58.0 nM 388.47 Nc1ncnc2c1ccn2[C@@H]1O[C@H](CN2CCCC23CCNCC3)[C@@H](O)[C@H]1O Homo sapiens CHEMBL4731562 cell-based format
CHEMBL4554624 OBDepict Cl S H H OH H N H HO N N H 2 N IC50 = 63.0 nM 376.87 Nc1ncnc2c1ccn2[C@@H]1C[C@H](Sc2ccc(Cl)cc2)[C@@H](O)[C@H]1O Homo sapiens CHEMBL4392560 cell-based format
CHEMBL4556400 OBDepict NH 2 N N N H O H OH H H HO O N IC50 = 79.4 nM 393.4 Nc1ncnc2c1ccn2[C@@H]1O[C@H](COc2ccc3cccnc3c2)[C@@H](O)[C@H]1O Homo sapiens CHEMBL4392562 cell-based format
CHEMBL1544509 OBDepict Cl O O N H O N H 3 C IC50 = 100.0 nM 342.78 Cc1ccnc(NC(=O)c2ccc(COc3ccc(Cl)cc3)o2)c1 Homo sapiens CHEMBL4327367 single protein format
CHEMBL4241763 OBDepict CH 3 N O O N Cl N H O HO H N H IC50 = 105.0 nM 487.0 CC(=O)N1CCC(Oc2nccc(C(=O)NC[C@@H](O)CNC3Cc4ccccc4C3)c2Cl)CC1 Homo sapiens CHEMBL4232664 cell-based format
CHEMBL4238041 OBDepict O N H OH H N N O O IC50 = 109.0 nM 423.51 O=C(NC[C@H](O)CN1CCc2ccccc2C1)c1ccc(C(=O)N2CCOCC2)cc1 Homo sapiens CHEMBL4232664 cell-based format
CHEMBL4576734 OBDepict NH 2 N N N H H OH H H HO O N IC50 = 125.0 nM 391.43 Nc1ncnc2c1ccn2[C@@H]1C[C@H](COc2ccc3cccnc3c2)[C@@H](O)[C@H]1O Homo sapiens CHEMBL4392562 cell-based format
CHEMBL4457371 OBDepict F F OH H H H HO H N H HO N N NH 2 IC50 = 134.0 nM 376.36 Nc1ncnc2c1ccn2[C@@H]1C[C@H]([C@H](O)c2ccc(F)c(F)c2)[C@@H](O)[C@H]1O Homo sapiens CHEMBL4392560 cell-based format
CHEMBL4451469 OBDepict Cl OH H H O H HO H N H HO N N N HO ClH IC50 = 158.0 nM 469.33 Cl.OC1CCN=C2c3ccn([C@@H]4O[C@H]([C@H](O)c5ccc(Cl)cc5)[C@@H](O)[C@H]4O)c3N=CN21 Homo sapiens CHEMBL4307074 cell-based format
CHEMBL3913586 OBDepict OH N N H N N N CH 3 IC50 = 180.0 nM 413.53 Cn1cnc2ccc(-c3ccnc(NCC(O)CN4CCc5ccccc5C4)c3)cc21 Homo sapiens CHEMBL4680701 cell-based format
CHEMBL418052 OBDepict NH 2 N N N N H O H OH H H HO S NH 2 H O HO IC50 = 200.0 nM 384.42 Nc1ncnc2c1ncn2[C@@H]1O[C@H](CSCC[C@H](N)C(=O)O)[C@@H](O)[C@H]1O Homo sapiens CHEMBL4479555 single protein format
CHEMBL4783377 OBDepict CH 3 N N H O H OH H N H HO N N H 2 N IC50 = 200.0 nM 402.5 CN1CCC2(CCCN2C[C@H]2O[C@@H](n3ccc4c(N)ncnc43)[C@H](O)[C@@H]2O)CC1 Homo sapiens CHEMBL4731562 cell-based format
CHEMBL3962874 OBDepict O N H O HO H N N IC50 = 327.0 nM 391.47 O=C(COc1cccc2cccnc12)NC[C@H](O)CN1CCc2ccccc2C1 Homo sapiens CHEMBL4680701 cell-based format
CHEMBL4092336 OBDepict CH 3 O N N H S N H O O O CH 3 IC50 = 330.0 nM 371.42 COC(=O)c1ccccc1NC(=O)CSc1nc2cc(OC)ccc2[nH]1 Homo sapiens CHEMBL4327367 single protein format
CHEMBL3914119 OBDepict O N H HO H N N IC50 = 406.0 nM 387.48 O=C(NC[C@@H](O)CN1CCc2ccccc2C1)c1cccc(-c2ccccn2)c1 Homo sapiens CHEMBL4680701 cell-based format
CHEMBL3977219 OBDepict OH N O N N CH 3 IC50 = 435.0 nM 413.52 Cn1cnc2ccc(-c3cccc(OCC(O)CN4CCc5ccccc5C4)c3)cc21 Homo sapiens CHEMBL4680701 cell-based format
CHEMBL4250915 OBDepict CH 3 N HN IC50 = 517.0 nM 354.5 CCn1c2ccccc2c2cc(CNC3CCCc4ccccc43)ccc21 Homo sapiens CHEMBL4232674 assay format
CHEMBL313316 OBDepict NH 2 N H O N O Cl IC50 = 570.0 nM 263.68 NC(=O)N/N=C/c1ccc(-c2ccc(Cl)cc2)o1 Homo sapiens CHEMBL4232677 single protein format
CHEMBL4458385 OBDepict H 2 N NH N N N N IC50 = 700.0 nM 316.37 Nc1cccc(Nc2ncnc3c2cnn3Cc2ccccc2)c1 Homo sapiens CHEMBL4327367 single protein format