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Q9Y2K7 | KDM2A_HUMAN | Lysine-specific demethylase 2A (KDM2A)

3D structures mapped by conservation among orthologs

[ Domain: "Double-stranded beta-helix" // JmjC_1 ]

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[ Domain: "F-box domain" // F-box-like_1 ]

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[ Domain: "CXXC domain" // zf-CXXC ]

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[ Domain: "FYVE/PHD zinc finger" // PHD ]

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[ Domain: "C-terminal helical domain in Jumonji domain-containing histone demethylases" // KOG1633_1 ]

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[ Alpha Fold Model ] (go)


Known binders annotated in ChEMBL

IC50 table Ki table

molecule_chembl_id structure assay_type relation values units mol_wt smiles organism assay_chembl_id bao_label
CHEMBL4284883 OBDepict H N N N N N N Cl IC50 <= 100.0 nM 350.81 Clc1ccccc1CCn1cnc(-c2cc(-c3c[nH]nn3)ccn2)c1 Homo sapiens CHEMBL4256999 cell-based format
CHEMBL4280770 OBDepict H N N N N N N IC50 <= 100.0 nM 356.43 c1ccc2c(c1)CCCC2Cn1cnc(-c2cc(-c3c[nH]nn3)ccn2)c1 Homo sapiens CHEMBL4256999 cell-based format
CHEMBL4279714 OBDepict CH 3 O N N N N N N H IC50 <= 100.0 nM 346.39 COc1ccccc1CCn1cnc(-c2cc(-c3c[nH]nn3)ccn2)c1 Homo sapiens CHEMBL4256999 cell-based format
CHEMBL4278748 OBDepict Cl N N N N N H N IC50 <= 100.0 nM 296.72 Clc1ccc(-n2cnc(-c3cc4[nH]nnc4cn3)c2)cc1 Homo sapiens CHEMBL4256999 cell-based format
CHEMBL4279782 OBDepict Cl N N N N N H N IC50 <= 100.0 nM 296.72 Clc1ccccc1-n1cnc(-c2cc3[nH]nnc3cn2)c1 Homo sapiens CHEMBL4256999 cell-based format
CHEMBL4280474 OBDepict F O N CH 3 N N N N N H IC50 <= 100.0 nM 390.42 Cn1cnc(-c2cc(-c3c[nH]nn3)ccn2)c1-c1ccc(F)cc1OCC1CC1 Homo sapiens CHEMBL4256999 cell-based format
CHEMBL4283409 OBDepict Cl N N N N N H N IC50 = 100.0 nM 296.72 Clc1cccc(-n2cnc(-c3cc4[nH]nnc4cn3)c2)c1 Homo sapiens CHEMBL4256999 cell-based format
CHEMBL4288093 OBDepict CH 3 O F N CH 3 N N N N N H IC50 = 100.0 nM 364.38 CCOc1cc(-c2c(-c3cc(-c4c[nH]nn4)ccn3)ncn2C)ccc1F Homo sapiens CHEMBL4256999 cell-based format
CHEMBL4294926 OBDepict H N N N N N N Cl IC50 = 100.0 nM 336.79 Clc1ccccc1Cn1cnc(-c2cc(-c3c[nH]nn3)ccn2)c1 Homo sapiens CHEMBL4256999 cell-based format
CHEMBL4283877 OBDepict H N N N N N N CH 3 IC50 <= 100.0 nM 316.37 CC(c1ccccc1)n1cnc(-c2cc(-c3c[nH]nn3)ccn2)c1 Homo sapiens CHEMBL4256999 cell-based format
CHEMBL4280949 OBDepict Cl Cl N N N N N H N IC50 <= 100.0 nM 345.19 Clc1ccc(Cn2cnc(-c3cc4[nH]nnc4cn3)c2)cc1Cl Homo sapiens CHEMBL4256999 cell-based format
CHEMBL4279899 OBDepict Cl N N N N N H N IC50 <= 100.0 nM 310.75 Clc1ccc(Cn2cnc(-c3cc4[nH]nnc4cn3)c2)cc1 Homo sapiens CHEMBL4256999 cell-based format
CHEMBL4292860 OBDepict Cl N N N N N H N IC50 <= 100.0 nM 310.75 Clc1cccc(Cn2cnc(-c3cc4[nH]nnc4cn3)c2)c1 Homo sapiens CHEMBL4256999 cell-based format
CHEMBL4281332 OBDepict Cl N N N N N H N IC50 <= 100.0 nM 310.75 Clc1ccccc1Cn1cnc(-c2cc3[nH]nnc3cn2)c1 Homo sapiens CHEMBL4256999 cell-based format
CHEMBL4286675 OBDepict H N N N N N N IC50 <= 100.0 nM 276.3 c1ccc(Cn2cnc(-c3cc4[nH]nnc4cn3)c2)cc1 Homo sapiens CHEMBL4256999 cell-based format
CHEMBL4282591 OBDepict H N N N N N N IC50 <= 100.0 nM 366.43 c1ccc2c(CCn3cnc(-c4cc(-c5c[nH]nn5)ccn4)c3)cccc2c1 Homo sapiens CHEMBL4256999 cell-based format
CHEMBL4287550 OBDepict H N N N N N N Cl F F F IC50 <= 100.0 nM 404.78 FC(F)(F)c1cccc(Cn2cnc(-c3cc(-c4c[nH]nn4)ccn3)c2)c1Cl Homo sapiens CHEMBL4256999 cell-based format
CHEMBL4288588 OBDepict H N N N N N N Cl Cl IC50 <= 100.0 nM 371.23 Clc1cccc(Cn2cnc(-c3cc(-c4c[nH]nn4)ccn3)c2)c1Cl Homo sapiens CHEMBL4256999 cell-based format
CHEMBL4294188 OBDepict CH 3 O N N N N N N H IC50 <= 100.0 nM 360.42 CCOc1ccccc1CCn1cnc(-c2cc(-c3c[nH]nn3)ccn2)c1 Homo sapiens CHEMBL4256999 cell-based format
CHEMBL1229308 OBDepict CH 3 N H 3 C N O HO O OH IC50 = 200.0 nM 288.39 CN(C)CCCCCCCCC(=O)N(O)CCC(=O)O Homo sapiens CHEMBL2427605 single protein format
CHEMBL3108958 OBDepict OH O F F F O N H N N H O OH H H 2 N IC50 = 220.0 nM 488.42 N[C@@H]1C[C@H]1c1ccc(NC(=O)c2ccnc(-c3cc(C(=O)O)ccn3)c2)cc1.O=C(O)C(F)(F)F Homo sapiens CHEMBL3110470 single protein format
CHEMBL2164246 OBDepict NH 2 NH O O OH IC50 = 250.0 nM 132.12 NNC(=O)CCC(=O)O Homo sapiens CHEMBL2167522 assay format
CHEMBL3785340 OBDepict CH 3 + N N CH 3 H 3 C _ I Ki = 280.0 nM 436.38 CCCCCC[n+]1ccc(/C=C/c2ccc(N(C)C)cc2)cc1.[I-] Homo sapiens CHEMBL3791458 cell-based format
CHEMBL2164245 OBDepict CH 3 NH N H O O HO IC50 = 370.0 nM 146.15 CNNC(=O)CCC(=O)O Homo sapiens CHEMBL2167522 assay format
CHEMBL3786265 OBDepict F + N N CH 3 CH 3 _ I Ki = 420.0 nM 460.33 CN(C)c1ccc(/C=C/c2cc[n+](Cc3ccc(F)cc3)cc2)cc1.[I-] Homo sapiens CHEMBL3791458 cell-based format
CHEMBL2392185 OBDepict H 2 N HN N HO O O HO IC50 = 420.0 nM 321.38 NCc1ccc(CNCCCCN(O)C(=O)/C=C/C(=O)O)cc1 Homo sapiens CHEMBL2396334 assay format
CHEMBL51979 OBDepict HO N H O O HO IC50 = 430.0 nM 133.1 O=C(O)CCC(=O)NO Homo sapiens CHEMBL2167522 assay format
CHEMBL222824 OBDepict OH O O O CH 3 IC50 = 570.0 nM 158.15 CC(=O)CC(=O)CCC(=O)O Homo sapiens CHEMBL2167522 assay format
CHEMBL3786952 OBDepict Cl CH 3 O N N N O OH IC50 = 820.0 nM 343.77 Cc1cc(Cl)ccc1COc1ccnn1-c1cc(C(=O)O)ccn1 Homo sapiens CHEMBL4223296 single protein format